Publications

 

2006

Dahm, R., and Geisler, R. Learning from small fry: The zebrafish as a genetic model organism for aquaculture fish species. Mar. Biotechnol. 8, 329-45.

Gómez-Skarmeta, J.L., Lenhard, B. and Becker, T.S. New technologies, new findings and new concepts in the study of vertebrate cis-regulatory sequences. Dev. Dyn. 235, 870-85.

Lam, C.S., Rastegar, S. and Strähle, U. (2006). Distribution of cannabinoid receptor 1 in the CNS of zebrafish. Neuroscience 138, 83-95.

Link, V., Carvalho, I., Stockinger, P., Shevchenko, A., and Heisenberg, C.-P. Identification of regulators of germ layer morphogenesis using proteomics in zebrafish. J. Cell Sci. 119, 2073-83.

Ninkovic, J., Folchert, A., Makhankov, Y.V., Neuhauss, S.C., Sillaber, I., Strähle, U. and Bally-Cuif, L. Genetic identification of AChE as a positive modulator of addiction to the psychostimulant D-amphetamine in zebrafish. J. Neurobiol. 66,463-75.

Ryu, S. and Driever, W. Minichromosome Maintenance Proteins as Markers for Proliferation Zones during Embryogenesis. Cell Cycle 5, 1140-2.

Rhinn, M., Picker, A. and Brand, M. Global and local mechanisms of forebrain and midbrain patterning. Curr Opin Neurobiol 16, 1-8.

Chapouton, P., Adolf, B., Leucht, C., Ryu, S., Driever, W. and Bally-Cuif, L. her5 expression defines a new pool of stem cells in the adult zebrafish midbrain. Development 133, 4293-303.

Stigloher, S., Ninkovic, J., Laplante, M., Geling, A., Tannhäuser, B., Topp, S., Kikuta, H., Becker, T.S., Houart, C. and Bally-Cuif, L. Segregation of telencephalic and eye field identities inside the zebrafish forebrain territory is controlled by Rx3. Development 133, 2925-35.

Adolf, B., Chapouton, P., Lam, C.S., Topp, S., Tannhäuser, B., Strähle, U., Götz, M. and Bally-Cuif, L. Conserved and acquired features of adult neurogenesis in the zebrafish telencephalon. Dev Biol 295, 278-93

Welten, M.C., de Haan, S.B., van den Boogert, N., Noordermeer, J.N., Lamers, G.E., Spaink, H.P., Meijer, A.H. and Verbeek, F.J. zebraFISH: Fluorescent in situ hybridization protocol and 3D imaging of gene expression patterns. Zebrafish 3, 465-76.

Zecchin, E., Filippi, A., Biemar, F., Tiso, N., Pauls, S., Ellertsdottir, E., Gnugge, L., Bortolussi, M., Driever, W. and Argenton, F . Distinct delta and jagged genes control sequential segregation of pancreatic cell types from precursor pools in zebrafish. Dev Biol Volume 301, Issue 1.

Ertzer, R., Müller, F., Hadzhiev, Y., Rathnam, S., Fischer, N., Rastegar, S., Strähle, U. Cooperation of sonic hedgehog enhancers in midline expression. Dev Biol, 301(2):578-89.

Deniziak, M., Thisse, C., Rederstorff, M., Hindelang, C., Thisse, B. and Lescure, A. Loss of selenoprotein N causes disruption of muscle architecture in the zebrafish embryo. Exp Cell Res, Volume 313, Issue 1.

Pezeron, G., Anselme, I., Laplante, M., Ellingsen, S., Becker, T.S., Charnay, P., Sc hneider-Manoury, S., Mourrain, P. and Ghislain, J. Duplicate sfrp1 genes in zebrafish: sfrp1a is dynamically expressed in the developing central nervous system, gut and lateral line. Gene Expr Patterns 6, 835-42.

Besser, J., Bagowski, C.P., Salas-Vidal, E., van Hemert, M.J., Bussmann, J. and Spaink, H.P. Expression analysis of the family of 14-3-3 proteins in zebrafish development. Gene Expr Patterns, Volume 7, Issue 4 , 511-520.

Krens, S.F., He, S., Spaink, H.P. and Snaar-Jagalska, B.E. Characterization and expression patterns of the MAPK family in zebrafish. Gene Expr Patterns 6, 1019-26.

Murayama, E., Kissa, K., Zapata, A., Mordelet, E., Briolat, V., Lin, H.F., Handin, R.I. and Herbomel, P. Tracing hematopoietic precursor migration to successive hematopoietic organs during zebrafish development. Immunity, 2006 Dec; 25(6):859-62.

van der Sar, A.M., Stockhammer, O.W., van der Laan, C., Spaink, H.P., Bitter, W. and Meijer, A.H. MyD88 innate immune function in a zebrafish embryo infection model. Infect Immun. 74, 2436-44.

Bahadori, R., Rinner, O, Schonthaler, H.B., Biehlmaier, O., Makhankov, Y.V., Paris, R., Jagadeeswaran, P., Neuhauss, S.C. The fade out mutant is a novel genetic model for Hermansky-Pudlak syndrome. Invest Ophthalmol Vis Sci 47, 4523-31.

Link, V., Carvalho, L., Castanon, I., Stockinger, P., Shevchenko, A., Heisenberg, C.P. Identification of regulators of germ layer morphogenesis using proteomics in zebrafish. J Cell Sci 119, 2073-83.

Cheng, C.W., Yan, C.H., Hui, C.C., Strähle U. and Cheng S.H. (2006). The homeobox gene irx1a is required for the propagation of the neurogenic waves in the zebrafish retina . Mech Dev 123, 252-63.

Ryu, S., Holzschuh, J., Mahler, J. and Wolfgang Driever. Genetic analysis of dopaminergic system development in zebrafish. J Neural Transm 70, 61-6.

Laplante, M., Konig, M., Kikuta, H. and Becker, T.S. Enhancer detection in the zebrafish using pseudotyped murine retroviruses. Methods 39, 189-98.

Ninkovic, J. and Bally-Cuif, L. The zebrafish as a model for assessing the reinforcing properties of drugs of abuse. Methods 39, 262-74.

Bally-Cuif, L. Teleosts: Simple organisms? Complex behavior. Zebrafish 3, 127-30.

Fleisch, V. and Neuhauss, S.C. Visual behavior in zebrafish. Zebrafish 3, 191-201.

He, S., Salas-Vidal, E., Rueb, S., Krens, S.F., Meijer, A.H., Snaar-Jagalska, B.E. and Spaink, H.P. Genetic and transcriptome characterization of model zebrafish cell lines. Zebrafish 3, 441-53.

Kabli, S., Alia, A., Spaink, H.P., Verbeek, F.J. and de Groot, H.J. Magnetic resonance microscopy of the adult zebrafish. Zebrafish 3, 431-39.

Hawkins, T.A., Haramis, P., Etard, C., Ashworth, R., Ray, S., Behra, M., Holder, N., Talbot, W.S., Strähle, U. and Wilson, S.W. hsp90a mediates assembly and integration of thick filaments onto nascent sarcomeres of skeletal muscle myofibrils. Submitted.

Kapsimali, M., Kloosterman, W.P., de Bruijn, E., Rosa, F., Wilson, S.W. and Plasterk, R.H. MicroRNAs show a wide diversity of expression profiles in the developing and mature CNS. Submitted.

Ryu, S., Mahler, J., Acampora, D., Holzschuh, J., Erhardt , S., Simeone, A. and Driever, W. Orthopedia homeodomain protein is essential for diencephalic dopaminergic neuron development. Submitted.

Voelker, D., Vess, C., Tillmann, M., Nagel, R., Otto, G.W., Geisler, R., Schirmer, K. and Scholz, S. Differential gene expression as a toxicant-sensitive endpoint in zebrafish embryos and larvae. Submitted .

2005

Amsterdam, A. and Becker, T.S. (2005). Transgenes as screening tools to probe and manipulate the zebrafish genome. Dev. Dyn. 234, 255-68.

Corredor-Adámez, M., Welten, M.C., Spaink, H.P., Jeffery, J.E., Schoon, R.T., de Bakker, M.A.G., Bagowski, C.P., Meijer, A.H., Verbeek, F.J. and Richardson, M.K. (2005). Genomic annotation and transcriptome analysis of the Danio rerio hox complex with description of a novel member, hoxb13a. Evol. Devel. 7, 362-75.

Cousin, X., Strähle, U. and Chatonnet, A. (2005). Comparison of zebrafish and mouse acetylcholinesterase. In Recent Trends in the Acetylcholinesterase System, M. Praveen and S. Kumar, eds. (Amsterdam: IOS Press).

Ellingsen, S., Laplante, M., Konig, M., Furmanek, T., Kikuta, H., Høivik, E. and Becker, T.S. (2005). Large-scale enhancer detection in the zebrafish genome. Development 132, 3799-3811.

Etard, C., Behra, M., Ertzer, R., Fischer, N., Jesuthasan, S., Blader, P., Geisler, R. and Strähle, U. (2005). Mutation in the delta-subunit of the nAChR suppresses the muscle defects caused by lack of Dystrophin. Dev. Dyn. 234, 1016-25.

Filippi, A., Tiso, N., Deflorian, G., Zecchin, E., Bortolussi, M., and Argenton, F. (2005). The basic helix-loop-helix olig3 establishes the neural plate boundary of the trunk and is necessary for development of the dorsal spinal cord. Proc. Natl. Acad. Sci. U. S. A. 102, 4377-82.

Knaut, H., Blader, P., Strähle, U., and Schier, A.F. (2005). Assembly of trigeminal sensory ganglia by chemokine signaling. Neuron 47, 653-66.

Langenberg, T. and Brand, M. (2005). Lineage restriction maintains a stable organizer cell population at the zebrafish midbrain-hindbrain boundary. Development 132, 3209-16.

Meijer, A.H., Verbeek, F.J., Salas-Vidal, E., Corredor-Adamez, M., Bussman, J., van der Sar, A.M., Otto, G.W., Geisler, R. and Spaink, H.P. (2005). Transcriptome profiling of adult zebrafish at the late stage of chronic tuberculosis due to Mycobacterium marinum infection. Mol. Immunol. 42, 1185–203.

Picker, A. and Brand, M. (2005). Fgf signals from a novel signaling center determine axial patterning of the prospective neural retina. Development 132, 4951-62.

Plessy, C., Dickmeis, T., Chalmel, F. and Strähle, U. (2005). Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes. Trends Genet. T 21, 207-10.

Ryu, S., Holzschuh, J., Erhardt, S., Ettl, A.-K., and Driever, W. (2005). Depletion of minichromosome maintenance protein 5 in the zebrafish retina causes cell cycle defect and apoptosis. Proc. Natl. Acad. Sci. U. S. A. 102, 18467-72.

Salas-Vidal, E., Meijer, A.H., Cheng, X. and Spaink, H.P. (2005). Genomic annotation and expression analysis of the zebrafish Rho small GTPase family during development and bacterial infection. Genomics 86, 25-37.

Schönthaler, H.B., Lampert, J.M., von Lintig, J., Schwarz, H., Geisler, R. and Neuhauss, S.C. (2005). A mutation in the pmel17 gene leads to defects in melanosome biogenesis and alterations the visual system in the zebrafish mutant fading vision. Dev. Biol. 284, 231-42.

Lam, C.S., Korzh, V. and Strähle, U. (2005). Zebrafish embryos are susceptible to the dopaminergic neurotoxin MPTP. Eur. J. Neurosci. 21, 1758-62.

van der Meer, D.L., van den Thillart, G.E., Witte, F., de Bakker, M.A., Besser, J., Richardson, M.K., Spaink, H.P., Leito, J.T, and Bagowski, C.P. (2005). Gene expression profiling of the long-term adaptive response to hypoxia in the gills of adult zebrafish. Am. J. Physiol. Regul. Integr. Comp. Physiol. 289, R1512-9.

Zecchin, E., Conigliaro, A., Tiso, N., Argenton, F. and Bortolussi, M. (2005). Expression analysis of jagged genes in zebrafish embryos. Dev. Dyn. 233, 638-45.

Vallone, D., Lahiri, K., Dickmeis, T. and Foulkes, N.S. (2005) Zebrafish Cell Clocks Feel the Heat and See the Light! Zebrafish 2, 171-87.

2004

Adolf, B., Bellipanni, G., Huber, V. and Bally-Cuif, L. (2004). atoh1.2 and beta3.1 are two new bHLH-encoding genes expressed in selective precursor cells of the zebrafish anterior hindbrain. Gene Expr. Patterns 5, 35-41.

Dahm, R., Geisler, R. and Nüsslein-Volhard, C. (2004). Zebrafish (Danio rerio) genome and genetics. In Encyclopedia of Molecular Cell Biology and Molecular Medicine, R. A. Meyers, ed. (Weinheim, Wiley-VCH) vol. 15, pp. 593-62.